Tuesday, July 01, 2008

Evolution of Anthocyanin pathway gene dihydroflavonol-4-reductases

I've started writing reviews of recent papers on GNOBB. I'll post my reviews here also. Below goes my first review, its on gene evolution through duplication, published online in Nature.

Gene duplication is one of the major ways of evolving genes with novel functions. There are two models on how gene duplications lead to new functions: 1) The NEO-F Model (Neo-functionalization) & 2) EAC (Escape of Adaptive Conflict) Model. In NEO-F model, new function is achieved after the event of duplication. On the contrary, in relatively unexplored EAC model genes acquire novel function which maintains its ancestral function also. This gene is constrained from improving either novel or ancestral function because of detrimental pleiotropic effects on the other function. But upon duplication, any of the copies can be selected for enhancement of the novel function. In a recent paper accepted in Nature Marias et al. explores the evolution of Anthocyanin pathway gene dihydroflavonol-4-reductases (DFR, EC number 1.1.1.219) in Eudicots with respect to both of these models. Their study suggests EAC as mode of evolutionary change of this gene. Besides they also conclude EAC may be far common mode of evolution than previously thought. One interesting conclusion of their study is that the evolution of novel function may sometimes be a byproduct of the evolution in enhanced ancestral activity.

Ref: Marais et al (2008). Escape from adaptive conflict after duplication in an anthocyanin pathway gene. doi:10.1038/nature07092.


Thursday, March 06, 2008

Sequencing Beta-Globin

Yesterday our Thalassaemia research has crossed an important milestone, it may be a small step in our project yet it is the very first and utterly significant stride towards achieving our ultimate goal.

We have successfully sequenced a region of Beta-globin from a healthy individual. We don't yet have the sequence in our hand, expecting to have it in a while. I'm quite excited!!! Can't wait anymore....

Thursday, January 17, 2008

DNA at last

Last few days had been quite hectic, starting from the 1st Day of 2008.

The objective was isolation and amplification of 587 bp region of Beta-globin. Started with isolation of buffy coat. I think this was the trickiest step, required lots of anticipations and assumptions. But I think we're very lucky, it didn't take much of our time. Then the DNA isolation and PCR. Today we've successfully completed PCR.

I'm very excited about tomorrow's work!